The atlas is where abstract connectivity meets tangible space — 78 neuropil meshes and thousands of neuron skeletons arranged in the coordinate system of a real fly brain.
Lessons Covered
Lesson 01 — Parcellation
The 78 neuropil regions of the Drosophila brain, loaded from FlyWire annotations. Hierarchical tree structure (brain → super-regions → neuropils) with query interface for navigating the anatomy.
Lesson 06 — The Volumetric Atlas
From point clouds to morphologies: 3D fly brain you can hold in your hands. This lesson loads neuropil surface meshes and neuron skeletons from Zenodo, rendering them as interactive HTML with navis and plotly.
The atlas moves the project from numbers to shapes. When you can rotate a neuropil mesh and see the neurons inside it, connectivity matrices stop being abstract and start being anatomy.
Source files:
domains/bravli/codev/01-parcellation.org(875 lines)domains/bravli/codev/06-atlas.org(1,023 lines)